| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 106290 |
| Chiloango | River (basin) | questionable | 41590 |
| Congo | River (basin) | endemic | 42160 |
| Ethiopian | Zoogeographic realm | endemic | 3818 |
| Itimbiri | River (basin) | native | 106290 |
| Kasai | River (basin) | native | 41591 |
| Kouilou-Niari | River (basin) | misidentification | 3818 |
| Lindi-Tshopo | River (basin) | native | 42183 |
| Lomami | River (basin) | native | 106245 |
| Lualaba | River (basin) | native | 106245 |
| Marine Lower Congo | River (basin) | questionable | 41590 |
| Middle Congo | River (basin) | native | 4910 |
| Ogowe | River (basin) | misidentification | 41599 |
| Ruki | River (basin) | native | 41580 |
| Wagenia Falls | River (basin) | native | 106245 |