| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 11441 |
| Arabian Sea | Sea/Bay/Gulf | native | 4833 |
| Bay of Bengal | Sea/Bay/Gulf | native | 1479 |
| Chalakudy River | River (basin) | native | 45207 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Euphrates and Tigris Delta | River (basin) | native | 115344 |
| Great Lake | Lake | native | 33813 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9893 |
| Indian Ocean | Sea/Bay/Gulf | native | 3505 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Mekong | River (basin) | native | 12693 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3391 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3391 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3391 |
| Oriental | Zoogeographic realm | endemic | 3391 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3391 |
| Persian Gulf | Sea/Bay/Gulf | native | 3505 |
| Red Sea | Sea/Bay/Gulf | native | 3505 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |