| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Indian Ocean | Sea/Bay/Gulf | native | 8525 |
| Indonesian Sea | Sea/Bay/Gulf | native | 1602 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| Pacific Ocean | Sea/Bay/Gulf | native | 8525 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 130287 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| West Philippine Sea | Sea/Bay/Gulf | native | 130287 |