| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 13331 |
| Bandama | River (basin) | native | 272 |
| Bia | River (basin) | native | 30488 |
| Cavally | River (basin) | native | 57129 |
| Comoé | River (basin) | native | 13331 |
| Densu | River (basin) | native | 57129 |
| Ébrié | Lagoon | native | 57129 |
| Ethiopian | Zoogeographic realm | endemic | 272 |
| Lower Niger | River (basin) | native | 57129 |
| Mono | River (basin) | native | 13331 |
| Niger | River (basin) | native | 57129 |
| Niger Delta | River (basin) | native | 57129 |
| Ogun | River (basin) | native | 57129 |
| Osse | River (basin) | native | 57129 |
| Ouémé | River (basin) | native | 57129 |
| San Pedro | River (basin) | native | 57129 |
| Sio | River (basin) | native | 57129 |
| Tano | River (basin) | native | 57129 |
| Volta | River (basin) | native | 57129 |