| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 106290 |
| Congo | River (basin) | endemic | 41590 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Itimbiri | River (basin) | native | 106290 |
| Kasai | River (basin) | native | 41591 |
| Léfini-Likouala | River (basin) | native | 44840 |
| Lindi-Tshopo | River (basin) | misidentification | 106290 |
| Lower Congo | River (basin) | native | 41591 |
| Lualaba | River (basin) | native | 45485 |
| Ruki | River (basin) | native | 93897 |
| Sanaga | River (basin) | questionable | 83890 |
| Ubangui | River (basin) | native | 45441 |
| Uélé | River (basin) | native | 41590 |
| Upper Lualaba | River (basin) | questionable | 45616 |