| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 272 |
| Bandama | River (basin) | native | 81282 |
| Benue | River (basin) | native | 81282 |
| Bia | River (basin) | native | 81282 |
| Boubo | River (basin) | native | 81282 |
| Cavally | River (basin) | native | 81282 |
| Cess | River (basin) | native | 81282 |
| Chad | River (basin) | native | 367 |
| Comoé | River (basin) | native | 81282 |
| Congo | River (basin) | questionable | 41414 |
| Corubal | River (basin) | native | 13331 |
| Cross | River (basin) | native | 81639 |
| Ébrié | Lagoon | native | 28587 |
| Eholié | River (basin) | native | 83625 |
| Ethiopian | Zoogeographic realm | endemic | 2940 |
| Géba | River (basin) | native | 13331 |
| Great Scarcies | River (basin) | native | 13331 |
| Konkouré | River (basin) | native | 81282 |
| Kotto | River (basin) | questionable | 41414 |
| Little Scarcies | River (basin) | native | 81282 |
| Lofa | River (basin) | native | 13331 |
| Mono | River (basin) | native | 81282 |
| Niger | River (basin) | native | 81282 |
| Pampana | River (basin) | native | 81282 |
| Pra | River (basin) | native | 81282 |
| Rokel | River (basin) | native | 81282 |
| Saint John | River (basin) | native | 13331 |
| Saint Paul | River (basin) | native | 13331 |
| San Pedro | River (basin) | native | 81282 |
| Sanaga | River (basin) | native | 81639 |
| Sassandra | River (basin) | native | 81282 |
| Senegal | River (basin) | native | 81282 |
| Tano | River (basin) | native | 81282 |
| Volta | River (basin) | native | 81282 |