| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bohol Sea | Sea/Bay/Gulf | endemic | 124115 |
| Camotes Sea | Sea/Bay/Gulf | endemic | 124115 |
| Pacific Ocean | Sea/Bay/Gulf | endemic | 124115 |
| Ragay Gulf | Sea/Bay/Gulf | endemic | 124115 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | endemic | 124115 |
| Tayabas Bay | Sea/Bay/Gulf | endemic | 124115 |