| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Atlantic Ocean | Sea/Bay/Gulf | native | 4343 |
| Bay of Bengal | Sea/Bay/Gulf | native | 1479 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 7050 |
| Indian Ocean | Sea/Bay/Gulf | native | 4343 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45140 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1479 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Sikao Creek | River (basin) | native | 52823 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 4343 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Taal Lake | Lake | native | 12165 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |