| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 4429 |
| Australian | Zoogeographic realm | native | 6871 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Benguela Current | Sea/Bay/Gulf | native | 3495 |
| Bensbach River | River (basin) | native | 50786 |
| Brahmaputra | River (basin) | native | 4832 |
| Canary Current | Sea/Bay/Gulf | native | 27000 |
| Cape Verde | Sea/Bay/Gulf | error | 94080 |
| Caribbean Sea | Sea/Bay/Gulf | native | 5217 |
| East Brazil Shelf | Sea/Bay/Gulf | native | 5217 |
| Ethiopian | Zoogeographic realm | native | 3495 |
| Fitzroy | River (basin) | native | 84364 |
| Ganges | River (basin) | native | 4832 |
| Great Lake | Lake | native | 12693 |
| Guinea Current | Sea/Bay/Gulf | native | 4429 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9859 |
| Indian Ocean | Sea/Bay/Gulf | native | 41819 |
| Indonesian Sea | Sea/Bay/Gulf | native | 13275 |
| Laguna de Bay | Lake | native | 280 |
| Mekong | River (basin) | native | 12693 |
| Naujan Lake | Lake | native | 280 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| North Brazil Shelf | Sea/Bay/Gulf | native | 5217 |
| Oriental | Zoogeographic realm | native | 45255 |
| Pacific Central-American Coastal | Sea/Bay/Gulf | native | 13613 |
| Pacific Ocean | Sea/Bay/Gulf | native | 41819 |
| Sabaki | River (basin) | native | 30558 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| Sanaga | River (basin) | native | 51193 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 30558 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South Brazil Shelf | Sea/Bay/Gulf | native | 5217 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 4735 |
| Taal Lake | Lake | native | 13446 |
| Wouri | River (basin) | native | 51193 |
| Zambezi | River (basin) | native | 39494 |