| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Erhjen River | River (basin) | native | 36073 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 26908 |
| Indian Ocean | Sea/Bay/Gulf | native | 559 |
| Kaoping River | River (basin) | native | 36073 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Pacific Ocean | Sea/Bay/Gulf | native | 34530 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Persian Gulf | Sea/Bay/Gulf | native | 80050 |
| Ruerhmen River | River (basin) | native | 36073 |
| Shihtsao River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 47843 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Taal Lake | Lake | questionable | 80679 |
| Tanshui River | River (basin) | native | 36073 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Tsengwen River | River (basin) | native | 36073 |