| Species | Name Used in Reference |
|---|---|
| Enneapterygius cerasinus Jordan & Seale, 1906 | Enneapterygius cerasinus (p. 349;fig.11d) |
| Enneapterygius gracilis Fricke, 1994 | Enneapterygius gracilis (p. 342;fig.4,7;tab.2,6,7;) |
| Enneapterygius minutus (Günther, 1877) | Enneapterygius minutus (p. 344;fig.4-6,8-10;tab.3,6,7) |
| Enneapterygius nanus (Schultz, 1960) | Enneapterygius nanus (p. 352;fig.4,6,12;tab.4,6,7) |
| Enneapterygius olivaceus Dewa, Tashiro & Motomura, 2023 | Enneapterygius olivaceus (p. 334;fig.1-6;tab.1,6,7;) |
| Enneapterygius philippinus (Peters, 1868) | Enneapterygius philippinus (p. 354;fig.4,6,13;tab.5-7;) |